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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha : |
10/08/2020 |
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Actualizado : |
05/09/2022 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
BHATTA, M.; GUTIERREZ, L.; CAMMAROTA, L.; CARDOZO, F.; GERMAN, S.; GÓMEZ-GUERRERO, B.; PARDO, M.F.; LANARO, V.; SAYAS, M.; CASTRO, A.J. |
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Afiliación : |
MADHAV BHATTA, Department of Agronomy, University of Wisconsin-Madison, 1575 Linden Dr., WI, 53706, USA.; LUCIA GUTIERREZ, Agronomy, University of Wisconsin-Madison, 1575 Linden Dr., WI, 53706, USA.; LORENA CAMMAROTA, Department of plant production, Facultad de Agronomía, Universidad de la República, Ruta 3, Km363, Paysandú 60000, Uruguay./Maltería Uruguay S.A. Ruta 55, Km26, Ombúes de Lavalle, Uruguay.; FERNANDA CARDOZO, Maltería Uruguay S.A. Ruta 55, Km26, Ombúes de Lavalle, Uruguay.; SILVIA ELISA GERMAN FAEDO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; BLANCA GÓMEZ-GUERRERO, LATU Foundation, Av Italia 6201, Montevideo 11500, Uruguay.; MARÍA FERNANDA PARDO, Maltería Oriental S.A., Camino Abrevadero 5525, Montevideo 12400, Uruguay.; VALERIA LANARO, LATU Foundation, Av Italia 6201, Montevideo 11500, Uruguay.; MERCEDES SAYAS, Maltería Oriental S.A., Camino Abrevadero 5525, Montevideo 12400, Uruguay.; ARIEL J. CASTRO, Ariel J. Castro ?Department of plant production, Facultad de Agronomía, Universidad de la República, Ruta 3, Km363, Paysandú 60000, Uruguay,. |
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Título : |
Multi-trait genomic prediction model increased the predictive ability for agronomic and malting quality traits in barley (Hordeum vulgare L.). |
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Fecha de publicación : |
2020 |
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Fuente / Imprenta : |
G3: Genes, Genomes, Genetics, March 1, 2020 vol. 10 no. 3 1113-1124. Open Acces. Doi: https://doi.org/10.1534/g3.119.400968 |
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DOI : |
10.1534/g3.119.400968 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received July 26, 2019/Accepted January 22, 2020/Published online March 5, 2020. This work was funded in part by the following grants from ANII (FSA-1-2013-12977), CSIC (CSIC_I+D_ 1131 and CSIC_Movilidad_ 1131). The work was also funded by the Cereals Breeding and Quantitative Genetics group at the University of Wisconsin - Madison. We would like to acknowledge Dr. Juan Diaz at INIA, who developed the double haploid population and also contributed to the planning of the study. Malteria Oriental S.A. (MOSA) contributed with the experiments in their experimental areas and with some of the lab work. Malteria Uruguay S.A. (MUSA) contributed to the experiments in their experimental areas. We would also like to acknowledge: USDA-ARS small grains genotyping lab at Fargo, North Dakota for genotyping service; the Center for High Throughput Computing (CHTC) service at the University of Wisconsin-Madison for providing the high-performance computing resources; and Dr. Bettina Lado for sharing the R scripts. We would like to thank two anonymous reviewers and editors who provided constructive suggestions to this manuscript. |
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Contenido : |
Abstract:
Plant breeders regularly evaluate multiple traits across multiple environments, which opens an avenue for using multiple traits in genomic prediction models. We assessed the potential of multi-trait (MT) genomic prediction model through evaluating several strategies of incorporating multiple traits (eight agronomic and malting quality traits) into the prediction models with two cross-validation schemes (CV1, predicting new lines with genotypic information only and CV2, predicting partially phenotyped lines using both genotypic and phenotypic information from correlated traits) in barley. The predictive ability was similar for single (ST-CV1) and multi-trait (MT-CV1) models to predict new lines. However, the predictive ability for agronomic traits was considerably increased when partially phenotyped lines (MT-CV2) were used. The predictive ability for grain yield using the MT-CV2 model with other agronomic traits resulted in 57% and 61% higher predictive ability than ST-CV1 and MT-CV1 models, respectively. Therefore, complex traits such as grain yield are better predicted when correlated traits are used. Similarly, a considerable increase in the predictive ability of malting quality traits was observed when correlated traits were used. The predictive ability for grain protein content using the MT-CV2 model with both agronomic and malting traits resulted in a 76% higher predictive ability than ST-CV1 and MT-CV1 models. Additionally, the higher predictive ability for new environments was obtained for all traits using the MT-CV2 model compared to the MT-CV1 model. This study showed the potential of improving the genomic prediction of complex traits by incorporating the information from multiple traits (cost-friendly and easy to measure traits) collected throughout breeding programs which could assist in speeding up breeding cycles. MenosAbstract:
Plant breeders regularly evaluate multiple traits across multiple environments, which opens an avenue for using multiple traits in genomic prediction models. We assessed the potential of multi-trait (MT) genomic prediction model through evaluating several strategies of incorporating multiple traits (eight agronomic and malting quality traits) into the prediction models with two cross-validation schemes (CV1, predicting new lines with genotypic information only and CV2, predicting partially phenotyped lines using both genotypic and phenotypic information from correlated traits) in barley. The predictive ability was similar for single (ST-CV1) and multi-trait (MT-CV1) models to predict new lines. However, the predictive ability for agronomic traits was considerably increased when partially phenotyped lines (MT-CV2) were used. The predictive ability for grain yield using the MT-CV2 model with other agronomic traits resulted in 57% and 61% higher predictive ability than ST-CV1 and MT-CV1 models, respectively. Therefore, complex traits such as grain yield are better predicted when correlated traits are used. Similarly, a considerable increase in the predictive ability of malting quality traits was observed when correlated traits were used. The predictive ability for grain protein content using the MT-CV2 model with both agronomic and malting traits resulted in a 76% higher predictive ability than ST-CV1 and MT-CV1 models. Additionally, the higher predictive ability for ... Presentar Todo |
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Palabras claves : |
GENOMIC PREDICTION; GENPRED; GRAIN QUALITY; GRAIN YIELD; MALTING QUALITY; MULTI-ENVIRONMENT; MULTI-TRAIT; SHARED DATA RESOURCES. |
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Asunto categoría : |
-- |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/16688/1/G3-Bethesda-2020.pdf
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056970/pdf/1113.pdf
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Marc : |
LEADER 04092naa a2200349 a 4500
001 1061265
005 2022-09-05
008 2020 bl uuuu u00u1 u #d
024 7 $a10.1534/g3.119.400968$2DOI
100 1 $aBHATTA, M.
245 $aMulti-trait genomic prediction model increased the predictive ability for agronomic and malting quality traits in barley (Hordeum vulgare L.).$h[electronic resource]
260 $c2020
500 $aArticle history: Received July 26, 2019/Accepted January 22, 2020/Published online March 5, 2020. This work was funded in part by the following grants from ANII (FSA-1-2013-12977), CSIC (CSIC_I+D_ 1131 and CSIC_Movilidad_ 1131). The work was also funded by the Cereals Breeding and Quantitative Genetics group at the University of Wisconsin - Madison. We would like to acknowledge Dr. Juan Diaz at INIA, who developed the double haploid population and also contributed to the planning of the study. Malteria Oriental S.A. (MOSA) contributed with the experiments in their experimental areas and with some of the lab work. Malteria Uruguay S.A. (MUSA) contributed to the experiments in their experimental areas. We would also like to acknowledge: USDA-ARS small grains genotyping lab at Fargo, North Dakota for genotyping service; the Center for High Throughput Computing (CHTC) service at the University of Wisconsin-Madison for providing the high-performance computing resources; and Dr. Bettina Lado for sharing the R scripts. We would like to thank two anonymous reviewers and editors who provided constructive suggestions to this manuscript.
520 $aAbstract: Plant breeders regularly evaluate multiple traits across multiple environments, which opens an avenue for using multiple traits in genomic prediction models. We assessed the potential of multi-trait (MT) genomic prediction model through evaluating several strategies of incorporating multiple traits (eight agronomic and malting quality traits) into the prediction models with two cross-validation schemes (CV1, predicting new lines with genotypic information only and CV2, predicting partially phenotyped lines using both genotypic and phenotypic information from correlated traits) in barley. The predictive ability was similar for single (ST-CV1) and multi-trait (MT-CV1) models to predict new lines. However, the predictive ability for agronomic traits was considerably increased when partially phenotyped lines (MT-CV2) were used. The predictive ability for grain yield using the MT-CV2 model with other agronomic traits resulted in 57% and 61% higher predictive ability than ST-CV1 and MT-CV1 models, respectively. Therefore, complex traits such as grain yield are better predicted when correlated traits are used. Similarly, a considerable increase in the predictive ability of malting quality traits was observed when correlated traits were used. The predictive ability for grain protein content using the MT-CV2 model with both agronomic and malting traits resulted in a 76% higher predictive ability than ST-CV1 and MT-CV1 models. Additionally, the higher predictive ability for new environments was obtained for all traits using the MT-CV2 model compared to the MT-CV1 model. This study showed the potential of improving the genomic prediction of complex traits by incorporating the information from multiple traits (cost-friendly and easy to measure traits) collected throughout breeding programs which could assist in speeding up breeding cycles.
653 $aGENOMIC PREDICTION
653 $aGENPRED
653 $aGRAIN QUALITY
653 $aGRAIN YIELD
653 $aMALTING QUALITY
653 $aMULTI-ENVIRONMENT
653 $aMULTI-TRAIT
653 $aSHARED DATA RESOURCES
700 1 $aGUTIERREZ, L.
700 1 $aCAMMAROTA, L.
700 1 $aCARDOZO, F.
700 1 $aGERMAN, S.
700 1 $aGÓMEZ-GUERRERO, B.
700 1 $aPARDO, M.F.
700 1 $aLANARO, V.
700 1 $aSAYAS, M.
700 1 $aCASTRO, A.J.
773 $tG3: Genes, Genomes, Genetics, March 1, 2020 vol. 10 no. 3 1113-1124. Open Acces. Doi: https://doi.org/10.1534/g3.119.400968
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Registro original : |
INIA La Estanzuela (LE) |
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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha actual : |
07/11/2018 |
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Actualizado : |
09/10/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - -- |
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Autor : |
DOS SANTOS, J.R.S.; LOPES, J.R.G; MEDEIROS, M.A.; CAMPPOS, É.M.; MEDEIROS, R.M.T.; RIET-CORREA, F. |
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Afiliación : |
Centro de Ciências Agrárias (CCA), Universidade Federal de Paraíba (UFPB), Brazil; Centro de Ciências Agrárias (CCA), Universidade Federal de Paraíba (UFPB), Brazil; Centro de Ciências Agrárias (CCA), Universidade Federal de Paraíba (UFPB), Brazil; Centro de Ciências Agrárias (CCA), Universidade Federal de Paraíba (UFPB), Brazil; Centro de Ciências Agrárias (CCA), Universidade Federal de Paraíba (UFPB), Brazil; FRANKLIN RIET-CORREA AMARAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Mortalidade embrionária e aborto em caprinos causados pela ingestão de Poincianella pyramidalis. [Embryonic mortality and abortion in goats caused by ingestion of Poincianella pyramidalis]. |
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Fecha de publicación : |
2018 |
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Fuente / Imprenta : |
Pesquisa Veterinária Brasileira v.38 ,n.7. p. 1259-1263, July 2018. OPEN ACCESS. |
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ISSN : |
0100-736X (Print) / 1678-5150 (Online) |
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DOI : |
10.1590/1678-5150-PVB-5480 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received on July 4, 2017 // Accepted for publication on July 5, 2017. |
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Contenido : |
ABSTRACT.
This study aimed to characterize the embryotoxic, teratogenic and abortifacient effect of Poincianella pyramidalis in goats. Twenty pregnant goats with 18 days of gestation were
divided into five groups of four animals each. After collection, the leaves of P. pyramidalis were dried in the shade and crushed. The daily feed provided to the goats was equivalent to 3% of their body weight, being 1% concentrated feed and 2% roughage. In Group 1 (control), the provided roughage was Cynodon dactylon (Tifton) hay; in Groups 2, 3 and 4, 10%, 20% and
80% of the C. dactylon roughage was replaced by dry and ground P. pyramidalis, respectively. In Group 5, all the roughage was replaced by green P. pyramidalis ad libitum, collected daily.
Ultrasonographic examination was performed twice a week throughout the pregnancy. Goats in Groups 1, 2 and 3, delivered normal kids. Two goats in Group 4 aborted at 127 and 90 days
of gestation. In group 5, three goats showed embryonic death at 25, 30 and 31 days of gestation and the other goat aborted at 39 days of pregnancy. Malformations were not observed. It is
suggested that P. pyramidalis, which is very common in the semiarid region of northeastern Brazil, should be considered as an important cause of reproductive losses in this area. Due to
its high palatability, it is important to avoid the ingestion of P. pyramidalis by pregnant and mating goats.
© 2018 Colegio Brasileiro de Patologia Animal. All rights reserved.
RESUMO.
O objetivo deste trabalho foi estudar o potencial embriotóxico, abortivo e teratogênico da Poincianella pyramidalis em caprinos. Para tanto foram utilizadas 20 cabras prenhes com 18 dias de gestação, divididas em cinco grupos de quatro animais. Depois da coleta, as folhas de P. pyramidalis era secas a sombra e trituradas. A alimentação diária fornecida aos caprinos foi proporcional a 3% do seu peso vivo, sendo 1% de alimento concentrado e 2% de volumoso. No Grupo 1 (controle), o volumoso fornecido foi apenas feno de Cynodon dactylon (Tifton). Já nos Grupos 2, 3 e 4, 10%, 20% e 80% do volumoso foi substituído por folhas secas e trituradas de P. pyramidalis, respectivamente. No Grupo 5, todo o volumoso foi constituído por P. pyramidalis verde ad libitum, coletadas diariamente. Para o acompanhamento das gestações, exames ultrassonográficos foram realizados duas vezes por semana, durante toda a gestação. As cabras dos Grupos 1, 2 e 3 pariram cabritos normais. Duas cabras no Grupo 4 abortaram, sendo uma com 127 dias de gestação e outra com 90 dias. No grupo 5, três cabras apresentaram morte embrionária no 25º, 30º e 31º dia de gestação e uma cabra abortou no 39º dia de gestação. No presente estudo não foi observada nenhuma malformação. Com esses resultados e considerando a ampla difusão de P. pyramidalis na região semiárida do nordeste Brasileiro sugere-se que esta planta é uma importante causa de perdas reprodutivas na região. Devido a sua alta palatabilidade, recomenda-se evitar a permanência de cabras prenhes em áreas onde ocorre P. pyramidalis. MenosABSTRACT.
This study aimed to characterize the embryotoxic, teratogenic and abortifacient effect of Poincianella pyramidalis in goats. Twenty pregnant goats with 18 days of gestation were
divided into five groups of four animals each. After collection, the leaves of P. pyramidalis were dried in the shade and crushed. The daily feed provided to the goats was equivalent to 3% of their body weight, being 1% concentrated feed and 2% roughage. In Group 1 (control), the provided roughage was Cynodon dactylon (Tifton) hay; in Groups 2, 3 and 4, 10%, 20% and
80% of the C. dactylon roughage was replaced by dry and ground P. pyramidalis, respectively. In Group 5, all the roughage was replaced by green P. pyramidalis ad libitum, collected daily.
Ultrasonographic examination was performed twice a week throughout the pregnancy. Goats in Groups 1, 2 and 3, delivered normal kids. Two goats in Group 4 aborted at 127 and 90 days
of gestation. In group 5, three goats showed embryonic death at 25, 30 and 31 days of gestation and the other goat aborted at 39 days of pregnancy. Malformations were not observed. It is
suggested that P. pyramidalis, which is very common in the semiarid region of northeastern Brazil, should be considered as an important cause of reproductive losses in this area. Due to
its high palatability, it is important to avoid the ingestion of P. pyramidalis by pregnant and mating goats.
© 2018 Colegio Brasileiro de Patologia Animal. All rights reserved.
RESUMO.
O objetivo de... Presentar Todo |
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Palabras claves : |
ABORTION; EMBRYONIC MORTALITY; GOATS; PLANT POISONING; PLATAFORMA SALUD ANIMAL; POINCIANELLA PYRAMIDALIS; POISONOUS PLANTS; RUMINANTS; TOXICOSE. |
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Asunto categoría : |
-- |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/11865/1/05-09-2018-02-4203-pvbAO2566.pdf
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Marc : |
LEADER 04261naa a2200325 a 4500
001 1059275
005 2019-10-09
008 2018 bl uuuu u00u1 u #d
022 $a0100-736X (Print) / 1678-5150 (Online)
024 7 $a10.1590/1678-5150-PVB-5480$2DOI
100 1 $aDOS SANTOS, J.R.S.
245 $aMortalidade embrionária e aborto em caprinos causados pela ingestão de Poincianella pyramidalis. [Embryonic mortality and abortion in goats caused by ingestion of Poincianella pyramidalis].$h[electronic resource]
260 $c2018
500 $aArticle history: Received on July 4, 2017 // Accepted for publication on July 5, 2017.
520 $aABSTRACT. This study aimed to characterize the embryotoxic, teratogenic and abortifacient effect of Poincianella pyramidalis in goats. Twenty pregnant goats with 18 days of gestation were divided into five groups of four animals each. After collection, the leaves of P. pyramidalis were dried in the shade and crushed. The daily feed provided to the goats was equivalent to 3% of their body weight, being 1% concentrated feed and 2% roughage. In Group 1 (control), the provided roughage was Cynodon dactylon (Tifton) hay; in Groups 2, 3 and 4, 10%, 20% and 80% of the C. dactylon roughage was replaced by dry and ground P. pyramidalis, respectively. In Group 5, all the roughage was replaced by green P. pyramidalis ad libitum, collected daily. Ultrasonographic examination was performed twice a week throughout the pregnancy. Goats in Groups 1, 2 and 3, delivered normal kids. Two goats in Group 4 aborted at 127 and 90 days of gestation. In group 5, three goats showed embryonic death at 25, 30 and 31 days of gestation and the other goat aborted at 39 days of pregnancy. Malformations were not observed. It is suggested that P. pyramidalis, which is very common in the semiarid region of northeastern Brazil, should be considered as an important cause of reproductive losses in this area. Due to its high palatability, it is important to avoid the ingestion of P. pyramidalis by pregnant and mating goats. © 2018 Colegio Brasileiro de Patologia Animal. All rights reserved. RESUMO. O objetivo deste trabalho foi estudar o potencial embriotóxico, abortivo e teratogênico da Poincianella pyramidalis em caprinos. Para tanto foram utilizadas 20 cabras prenhes com 18 dias de gestação, divididas em cinco grupos de quatro animais. Depois da coleta, as folhas de P. pyramidalis era secas a sombra e trituradas. A alimentação diária fornecida aos caprinos foi proporcional a 3% do seu peso vivo, sendo 1% de alimento concentrado e 2% de volumoso. No Grupo 1 (controle), o volumoso fornecido foi apenas feno de Cynodon dactylon (Tifton). Já nos Grupos 2, 3 e 4, 10%, 20% e 80% do volumoso foi substituído por folhas secas e trituradas de P. pyramidalis, respectivamente. No Grupo 5, todo o volumoso foi constituído por P. pyramidalis verde ad libitum, coletadas diariamente. Para o acompanhamento das gestações, exames ultrassonográficos foram realizados duas vezes por semana, durante toda a gestação. As cabras dos Grupos 1, 2 e 3 pariram cabritos normais. Duas cabras no Grupo 4 abortaram, sendo uma com 127 dias de gestação e outra com 90 dias. No grupo 5, três cabras apresentaram morte embrionária no 25º, 30º e 31º dia de gestação e uma cabra abortou no 39º dia de gestação. No presente estudo não foi observada nenhuma malformação. Com esses resultados e considerando a ampla difusão de P. pyramidalis na região semiárida do nordeste Brasileiro sugere-se que esta planta é uma importante causa de perdas reprodutivas na região. Devido a sua alta palatabilidade, recomenda-se evitar a permanência de cabras prenhes em áreas onde ocorre P. pyramidalis.
653 $aABORTION
653 $aEMBRYONIC MORTALITY
653 $aGOATS
653 $aPLANT POISONING
653 $aPLATAFORMA SALUD ANIMAL
653 $aPOINCIANELLA PYRAMIDALIS
653 $aPOISONOUS PLANTS
653 $aRUMINANTS
653 $aTOXICOSE
700 1 $aLOPES, J.R.G
700 1 $aMEDEIROS, M.A.
700 1 $aCAMPPOS, É.M.
700 1 $aMEDEIROS, R.M.T.
700 1 $aRIET-CORREA, F.
773 $tPesquisa Veterinária Brasileira$gv.38 ,n.7. p. 1259-1263, July 2018. OPEN ACCESS.
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